Source Code¶
ASHS, HyperASHS and the tools they build on are open source and developed on GitHub. Use the GitHub issue trackers to report bugs and request features.
ASHS¶
| Project | Repository | Description |
|---|---|---|
| HyperASHS | pyushkevich/HyperResASHS | The HyperASHS Python package (hyperresashs) and the hrashs command |
| ASHS Classic | pyushkevich/ashs | The original ASHS shell scripts and atlas building tools |
| This website | pyushkevich/ashs-website | Documentation source. Corrections and suggestions are welcome as issues or pull requests. |
Related tools¶
| Project | Repository | Description |
|---|---|---|
| CRASHS | pyushkevich/crashs | Surface-based modeling and thickness analysis of ASHS and HyperASHS segmentations |
| ITK-SNAP | pyushkevich/itksnap | Image viewer and segmentation tool; client for Cloud ASHS and Cloud HyperASHS |
| Greedy | pyushkevich/greedy | Fast deformable image registration, used by ASHS and HyperASHS |
| Convert3D | pyushkevich/c3d | Command-line image processing tool, used by ASHS |
| nnU-Net | MIC-DKFZ/nnUNet | The deep learning segmentation framework underlying HyperASHS |
The pre-trained HyperASHS models and the ASHS Classic atlas packages are hosted on Hugging Face rather than GitHub; see Models and Atlases.